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Apo and ligand bound structures of ModA from the archaeon Methanosarcina acetivorans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 2.1M ammonium sulfate, 3% (v/v) isopropanol with final concentration of sodium molybdate at 125 mM in the drop, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 2 VAPOR DIFFUSION, HANGING DROP 8 293 2.1M ammonium sulfate, 1% (v/v) isopropanol with final concentration of sodium molybdate at 125 mM in the drop, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.512 α = 90 b = 66.12 β = 95.99 c = 61.46 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-04-30 SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2007-04-30 SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.000 ALS 8.2.2 2 SYNCHROTRON ALS BEAMLINE 8.2.2 1.000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.45 54.07 93.7 0.082 0.071 13.9 3.5 13167
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.45 2.54 91.4 0.479 0.431 2 3.3 1265
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.45 54.07 13107 681 93.79 0.208 0.207 0.2031 0.229 0.226 RANDOM 37.046
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.51 -3.43 2.06 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.305 r_dihedral_angle_4_deg 13.143 r_dihedral_angle_3_deg 13.054 r_dihedral_angle_1_deg 4.851 r_scangle_it 3.036 r_mcangle_it 2.918 r_scbond_it 2.128 r_mcbond_it 1.803 r_angle_refined_deg 1.727 r_chiral_restr 0.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.305 r_dihedral_angle_4_deg 13.143 r_dihedral_angle_3_deg 13.054 r_dihedral_angle_1_deg 4.851 r_scangle_it 3.036 r_mcangle_it 2.918 r_scbond_it 2.128 r_mcbond_it 1.803 r_angle_refined_deg 1.727 r_chiral_restr 0.101 r_bond_refined_d 0.011 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2416 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 20
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling EPMR phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection