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M. acetivorans Molybdate-Binding Protein (ModA) in Unliganded Open Form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.4 293 1.4M tri-Ammonium Citrate, p6.4, vapor diffusion, sitting drop, temperature 293K 2 VAPOR DIFFUSION, SITTING DROP 6.4 293 1.6M tri-Ammonium Citrate, p6.4, soaked in 0.5M potassium iodide for 30 seconds, vapor diffusion, sitting drop, temperature 293K 3 VAPOR DIFFUSION, SITTING DROP 6.4 293 1.6M tri-Ammonium Citrate, p6.4, soaked in 1M cesium chloride for 18 minutes, vapor diffusion, sitting drop, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.179 α = 90 b = 82.179 β = 90 c = 104.94 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-11-21 SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2004-11-21 SINGLE WAVELENGTH 3 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2004-11-23 SINGLE WAVELENGTH 1,2,3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.954 ALS 8.2.2 2 SYNCHROTRON ALS BEAMLINE 8.2.2 1.459 ALS 8.2.2 3 ROTATING ANODE OTHER 1.542
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 1.94 38.26 99.9 0.092 0.079 18.6 10.86 29447
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3 1.94 2.01 100 0.5 0.468 10.43 2936
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.95 38.26 29271 1453 99.94 0.178 0.177 0.1897 0.208 0.2214 RANDOM 17.613
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 0.46 0.93 -1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.176 r_dihedral_angle_4_deg 21.826 r_dihedral_angle_3_deg 13.497 r_dihedral_angle_1_deg 5.982 r_scangle_it 4.318 r_scbond_it 2.613 r_mcangle_it 1.64 r_angle_refined_deg 1.392 r_mcbond_it 0.883 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.176 r_dihedral_angle_4_deg 21.826 r_dihedral_angle_3_deg 13.497 r_dihedral_angle_1_deg 5.982 r_scangle_it 4.318 r_scbond_it 2.613 r_mcangle_it 1.64 r_angle_refined_deg 1.392 r_mcbond_it 0.883 r_chiral_restr 0.108 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2423 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection