☰ Navigation Tabs
Pyranose 2-oxidase H167A/T169G mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TT0 pdb entry 1TT0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 298 0.1M MES, 50MM MGCL2, 10% (W/V)% MONOMETHYLETHER PEG 2000, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.55 51.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.206 α = 90 b = 102.964 β = 90.82 c = 137.122 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2009-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 1.03790 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 96.8 0.067 12.3 3 295544 295544
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 98.3 0.76 1.8 2.9 47143
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT pdb entry 1TT0 1.7 29.3 292517 292517 3027 96.83 0.18056 0.18056 0.18019 0.1968 0.21631 0.2277 RANDOM 12.274
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.87 -0.44 -0.03 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.946 r_dihedral_angle_4_deg 15.744 r_dihedral_angle_3_deg 14.216 r_dihedral_angle_1_deg 6.997 r_scangle_it 4.756 r_angle_other_deg 3.275 r_scbond_it 3.101 r_angle_refined_deg 2.071 r_mcangle_it 2.039 r_mcbond_it 1.253
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.946 r_dihedral_angle_4_deg 15.744 r_dihedral_angle_3_deg 14.216 r_dihedral_angle_1_deg 6.997 r_scangle_it 4.756 r_angle_other_deg 3.275 r_scbond_it 3.101 r_angle_refined_deg 2.071 r_mcangle_it 2.039 r_mcbond_it 1.253 r_mcbond_other 0.441 r_chiral_restr 0.187 r_bond_refined_d 0.024 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18111 Nucleic Acid Atoms Solvent Atoms 1900 Heterogen Atoms 294
Software Software Software Name Purpose MAR345 data collection REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing