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Structure of a cubic crystal form of X (ADRP) domain from FCoV with ADP-ribose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 298 di-ammonium citrate, pH 6.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 6.034559 79.617401
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 220.236 α = 90 b = 220.236 β = 90 c = 220.236 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2009-09-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.812 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.9 20 98.9 0.463 0.559 4.45 7.5 32610 32246 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.9 4.13 98.5 0.67 0.906 2.5 7.2 4936
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 3.91 19.94 32192 31727 465 99.8 0.199 0.199 0.199 0.239 0.2402 RANDOM 31.085
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.387 r_dihedral_angle_3_deg 21.264 r_dihedral_angle_4_deg 21.032 r_dihedral_angle_1_deg 8.883 r_scangle_it 3.881 r_angle_refined_deg 2.601 r_scbond_it 2.147 r_mcangle_it 1.637 r_mcbond_it 0.817 r_chiral_restr 0.155
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.387 r_dihedral_angle_3_deg 21.264 r_dihedral_angle_4_deg 21.032 r_dihedral_angle_1_deg 8.883 r_scangle_it 3.881 r_angle_refined_deg 2.601 r_scbond_it 2.147 r_mcangle_it 1.637 r_mcbond_it 0.817 r_chiral_restr 0.155 r_bond_refined_d 0.029 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10384 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 111
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data scaling COMBAT data reduction Auto-Rickshaw phasing