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Discovery of 3H-benzo[4,5]thieno[3,2-d]pyrimidin-4-ones as Potent, Highly Selective and Orally Bioavailable Pim Kinases Inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 312 VAPOR DIFFUSION, HANGING DROP, temperature 312K
Crystal Properties Matthews coefficient Solvent content 3.21 61.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.764 α = 90 b = 96.764 β = 90 c = 80.794 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 1.0000 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 94.8 25245 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.1 48.39 22706 1226 94.98 0.23409 0.23286 0.2359 0.25723 0.2613 RANDOM 29.967
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.14 0.28 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.71 r_dihedral_angle_4_deg 17.316 r_dihedral_angle_3_deg 13.831 r_dihedral_angle_1_deg 5.9 r_scangle_it 2.836 r_scbond_it 1.813 r_mcangle_it 1.401 r_angle_refined_deg 1.287 r_mcbond_it 0.844 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.71 r_dihedral_angle_4_deg 17.316 r_dihedral_angle_3_deg 13.831 r_dihedral_angle_1_deg 5.9 r_scangle_it 2.836 r_scbond_it 1.813 r_mcangle_it 1.401 r_angle_refined_deg 1.287 r_mcbond_it 0.844 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.201 r_nbd_refined 0.2 r_xyhbond_nbd_refined 0.123 r_symmetry_hbond_refined 0.114 r_chiral_restr 0.094 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2230 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement