X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherprevious determined liganded structure

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION72982.1 - 1.5 D-L malic acid, pH 7.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.4148.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 95.103α = 90
b = 101.257β = 90
c = 68.488γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152005-12-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.21.00ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.147.5594.70.0540.06112.23.719678186280.10.129.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1886.10.240.3052.52.051671

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUTprevious determined liganded structure2.1202005018581146994.560.2010.2010.1950.271RANDOM28.953
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.440.280.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.892
r_dihedral_angle_4_deg19.624
r_dihedral_angle_3_deg17.312
r_dihedral_angle_1_deg6.345
r_scangle_it5.635
r_scbond_it3.515
r_mcangle_it2.248
r_angle_refined_deg1.901
r_mcbond_it1.232
r_chiral_restr0.253
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.892
r_dihedral_angle_4_deg19.624
r_dihedral_angle_3_deg17.312
r_dihedral_angle_1_deg6.345
r_scangle_it5.635
r_scbond_it3.515
r_mcangle_it2.248
r_angle_refined_deg1.901
r_mcbond_it1.232
r_chiral_restr0.253
r_bond_refined_d0.023
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2363
Nucleic Acid Atoms
Solvent Atoms176
Heterogen Atoms27

Software

Software
Software NamePurpose
d*TREKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
BOSdata collection
d*TREKdata reduction
REFMACphasing