☰ Navigation Tabs
Crystal structure of Putative phosphoheptose isomerase (YP_001815198.1) from Exiguobacterium sp. 255-15 at 1.95 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 1.6000M (NH4)2SO4, 0.1000M NaCl, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.94 58.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.658 α = 90 b = 81.658 β = 90 c = 117.652 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 29.412 100 0.086 0.086 14 5.5 33717 27.798
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 100 0.577 0.577 1.3 5.6 2466
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 29.412 33677 1706 99.96 0.164 0.163 0.188 0.213 RANDOM 31.652
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 0.23 0.47 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.305 r_dihedral_angle_4_deg 16.812 r_dihedral_angle_3_deg 14.3 r_scangle_it 6.993 r_dihedral_angle_1_deg 5.698 r_scbond_it 5.208 r_mcangle_it 2.889 r_mcbond_it 2.092 r_angle_refined_deg 1.426 r_angle_other_deg 0.958
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.305 r_dihedral_angle_4_deg 16.812 r_dihedral_angle_3_deg 14.3 r_scangle_it 6.993 r_dihedral_angle_1_deg 5.698 r_scbond_it 5.208 r_mcangle_it 2.889 r_mcbond_it 2.092 r_angle_refined_deg 1.426 r_angle_other_deg 0.958 r_mcbond_other 0.616 r_symmetry_vdw_refined 0.295 r_symmetry_vdw_other 0.241 r_nbd_refined 0.217 r_nbd_other 0.197 r_nbtor_refined 0.174 r_symmetry_hbond_refined 0.167 r_xyhbond_nbd_refined 0.145 r_nbtor_other 0.088 r_chiral_restr 0.086 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2646 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction