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Crystal structure of putative transcription regulation repressor (LACI family) FROM Corynebacterium glutamicum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 0.1M SODIUM CACODYLATE, PH 6.5, 2M AMMONIUM SULFATE, 200MM SODIUM CHLORIDE, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.45 49.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.97 α = 90 b = 91.97 β = 90 c = 285.453 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 315 MIRRORS 2009-08-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 100 0.104 5.1 11.7 32657 -5 50.208
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 100 0.95 1 11.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 20 31506 1032 99.91 0.22604 0.22425 0.2235 0.28353 0.2862 RANDOM 60.047
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.42 1.21 2.42 -3.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.593 r_dihedral_angle_3_deg 15.905 r_dihedral_angle_4_deg 13.896 r_scangle_it 12.604 r_scbond_it 9.171 r_mcangle_it 6.77 r_dihedral_angle_1_deg 5.239 r_mcbond_it 4.742 r_angle_refined_deg 1.13 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.593 r_dihedral_angle_3_deg 15.905 r_dihedral_angle_4_deg 13.896 r_scangle_it 12.604 r_scbond_it 9.171 r_mcangle_it 6.77 r_dihedral_angle_1_deg 5.239 r_mcbond_it 4.742 r_angle_refined_deg 1.13 r_nbtor_refined 0.292 r_xyhbond_nbd_refined 0.143 r_nbd_refined 0.136 r_symmetry_vdw_refined 0.136 r_symmetry_hbond_refined 0.13 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3858 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 21
Software Software Software Name Purpose SHELX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing