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Importance of Mg2+ in the Ca2+-Dependent Folding of the gamma-Carboxyglutamic Acid Domains of Vitamin K-Dependent clotting and anticlotting Proteins
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 PEG 400, potassium chloride, magnesium chloride, calcium chloride, HEPES, PH 7.0, VAPOR DIFFUSION
Crystal Properties Matthews coefficient Solvent content 2.43 49.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.22 α = 90 b = 62.36 β = 101.81 c = 71.03 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MARRESEARCH MIRRORS 2001-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 30 90.1 0.041 27 4 66375 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 91 0.455 0.043 27 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 23.22 56575 3024 89.13 0.19246 0.19066 0.1883 0.22648 0.2222 RANDOM 25.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 1.12 0.87 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.982 r_dihedral_angle_4_deg 22.472 r_dihedral_angle_3_deg 15.457 r_dihedral_angle_1_deg 6.249 r_scangle_it 5.371 r_scbond_it 3.612 r_mcangle_it 2.623 r_angle_refined_deg 2.566 r_mcbond_it 1.61 r_bond_refined_d 1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.982 r_dihedral_angle_4_deg 22.472 r_dihedral_angle_3_deg 15.457 r_dihedral_angle_1_deg 6.249 r_scangle_it 5.371 r_scbond_it 3.612 r_mcangle_it 2.623 r_angle_refined_deg 2.566 r_mcbond_it 1.61 r_bond_refined_d 1.45 r_nbtor_refined 0.304 r_nbd_refined 0.245 r_symmetry_vdw_refined 0.21 r_chiral_restr 0.173 r_metal_ion_refined 0.155 r_xyhbond_nbd_refined 0.126 r_symmetry_hbond_refined 0.118 r_gen_planes_refined 0.032 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3422 Nucleic Acid Atoms Solvent Atoms 407 Heterogen Atoms 198
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SCALEPACK data scaling