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N-terminal fragment of ribosomal protein L10 from Methanococcus jannaschii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 295 KSCN, PEG4000, NaAcetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.09 41.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57 α = 90 b = 70.08 β = 90 c = 97.96 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm Multilayer mirror 2009-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-5 0.90778 MAX II I911-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 92.5 0.056 21.61 4.7 50801
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.7 85 0.38 4.45 4.7 7327
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Solved with MAD and refined against native data set THROUGHOUT 1.6 15 52013 49365 2648 99.2 0.229 0.18412 0.1816 0.1808 0.23321 0.2292 RANDOM 29.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 1.83 -1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.983 r_sphericity_free 18.563 r_sphericity_bonded 15.384 r_dihedral_angle_4_deg 12.533 r_dihedral_angle_3_deg 10.868 r_scangle_it 7.659 r_scbond_it 5.002 r_mcangle_it 4.709 r_dihedral_angle_1_deg 3.576 r_rigid_bond_restr 3.519
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.983 r_sphericity_free 18.563 r_sphericity_bonded 15.384 r_dihedral_angle_4_deg 12.533 r_dihedral_angle_3_deg 10.868 r_scangle_it 7.659 r_scbond_it 5.002 r_mcangle_it 4.709 r_dihedral_angle_1_deg 3.576 r_rigid_bond_restr 3.519 r_mcbond_it 3.065 r_angle_refined_deg 0.929 r_chiral_restr 0.065 r_gen_planes_refined 0.004 r_bond_refined_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3207 Nucleic Acid Atoms Solvent Atoms 392 Heterogen Atoms
Software Software Software Name Purpose MAR345 data collection PHENIX model building REFMAC refinement XDS data reduction XDS data scaling PHENIX phasing