Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Zebra fish alpha-1 glycine receptor bound with strychnine
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK III
Cryogen Name
ETHANE
Sample Vitrification Details
Blot for 3.5 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
37094
Reported Resolution (Å)
3.9
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Particle picking, 2D classification, 3D classification, refinement, and reconstruction were done using Relion. Movies were aligned using motioncorr. ...
Particle picking, 2D classification, 3D classification, refinement, and reconstruction were done using Relion. Movies were aligned using motioncorr. (Single particle--Applied symmetry: C5)
Refinement Type
Symmetry Type
POINT
Point Symmetry
C5
Map-Model Fitting and Refinement
Id
1 (3RHW, 3RHW, 3RHW, 3RHW, 3RHW)
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Overall B Value
Fitting Procedure
Details
REFINEMENT PROTOCOL--rigid body DETAILS--The model (3RHW) was fit into the
density map using UCSF Chimera. Further de novo model building was done us ...
REFINEMENT PROTOCOL--rigid body DETAILS--The model (3RHW) was fit into the
density map using UCSF Chimera. Further de novo model building was done using
COOT.