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Structure of the yeast mitochondrial large ribosomal subunit
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.5 r_dihedral_angle_3_deg 19.492 r_dihedral_angle_1_deg 18.535 r_dihedral_angle_4_deg 15.808 r_lrange_it 9.481 r_lrange_other 9.481 r_mcangle_it 4.278 r_mcangle_other 4.278 r_paralell_plane_angle_deg 4.002 r_scangle_it 3.916
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.5 r_dihedral_angle_3_deg 19.492 r_dihedral_angle_1_deg 18.535 r_dihedral_angle_4_deg 15.808 r_lrange_it 9.481 r_lrange_other 9.481 r_mcangle_it 4.278 r_mcangle_other 4.278 r_paralell_plane_angle_deg 4.002 r_scangle_it 3.916 r_scangle_other 3.916 r_mcbond_it 2.447 r_mcbond_other 2.447 r_scbond_it 2.28 r_scbond_other 2.28 r_angle_other_deg 1.095 r_angle_refined_deg 0.999 r_ext_dist_refined_d 0.579 r_chiral_restr 0.238 r_nbtor_refined 0.215 r_symmetry_nbd_other 0.195 r_xyhbond_nbd_refined 0.184 r_nbd_refined 0.183 r_metal_ion_refined 0.097 r_symmetry_nbtor_other 0.074 r_symmetry_xyhbond_nbd_other 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Sample Yeast Mitochondrial Large Ribosomal Subunit
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK II Cryogen Name ETHANE Sample Vitrification Details Blot 2.5 seconds before plunging into liquid ethane (FEI VITROBOT MARK II)
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 47124 Reported Resolution (Å) 3.2 Resolution Method FSC 0.143 CUT-OFF Other Details A newly developed statistical movie processing approach was used to compensate for beam-induced movement. Refinement Type HALF-MAPS REFINED INDEPENDENTLY Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON II (4k x 4k) Electron Dose (electrons/Å**2) 25
Imaging Experiment 1 Date of Experiment 2013-05-25 Temperature (Kelvin) 85 Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 4700 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 59000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details Objective lens astigmatism was corrected at 59,000 times magnification
EM Software Task Software Package Version CTF CORRECTION CTFFIND 3 RECONSTRUCTION RELION
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details Each particle