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CryoEM reconstruction of complement decay-accelerating factor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OJW
Sample Complement decay-accelerating factor bound to coxsackievirus B3-RD strain
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details Blotted before plunging in liquid ethane (homemade plunger).
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 3010 Reported Resolution (Å) 9 Resolution Method Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (1OJW) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target average map value Overall B Value Fitting Procedure Details METHOD--Local refinement, rigid body REFINEMENT PROTOCOL--rigid body
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 24
Imaging Experiment 1 Date of Experiment 2006-08-04 Temperature (Kelvin) 93 Microscope Model FEI/PHILIPS CM300FEG/T Minimum Defocus (nm) 1000 Maximum Defocus (nm) 4600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model GATAN LIQUID NITROGEN Nominal Magnification 45000 Calibrated Magnification 47000 Source TUNGSTEN HAIRPIN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version CTF CORRECTION CTFFIND MODEL FITTING UCSF Chimera PARTICLE SELECTION autopp PARTICLE SELECTION RobEM RECONSTRUCTION Auto3DEM
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details AUTO3DEM