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Crystal Structure of Rhodanese-like Domain Protein from Staphylococcus aureus
Crystallization Crystal Properties Matthews coefficient Solvent content 2.75 55.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.412 α = 90 b = 51.995 β = 90 c = 58.971 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2008-02-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793, 0.9795 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 39 98.9 0.075 11.2 5.3 8559 23.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 97.1 0.27 2.8 3.9 1633
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 15.62 8559 8559 428 99.76 0.193 0.193 0.191 0.1931 0.234 0.2405 RANDOM 22.976
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 1.21 -1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.863 r_dihedral_angle_4_deg 16.724 r_dihedral_angle_3_deg 15.997 r_dihedral_angle_1_deg 5.461 r_scangle_it 5.415 r_angle_other_deg 4.29 r_scbond_it 3.247 r_mcangle_it 1.997 r_angle_refined_deg 1.488 r_mcbond_it 1.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.863 r_dihedral_angle_4_deg 16.724 r_dihedral_angle_3_deg 15.997 r_dihedral_angle_1_deg 5.461 r_scangle_it 5.415 r_angle_other_deg 4.29 r_scbond_it 3.247 r_mcangle_it 1.997 r_angle_refined_deg 1.488 r_mcbond_it 1.061 r_chiral_restr 0.104 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.007 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 785 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection CNS refinement SBC-Collect data collection HKL-2000 data reduction HKL-3000 data scaling CNS phasing