X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72770.2 M lithium sulfate, 0.1 M Tris buffer, 2 M ammonium sulfate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.9157.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.531α = 90
b = 67.531β = 90
c = 137.852γ = 120
Symmetry
Space GroupP 31

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152009-05-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9792APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3461000.08611.27312473124760.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.341000.8192.676.61580

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.3463117031170157099.780.1830.1830.1810.218RANDOM28.947
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.41-0.21-0.410.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.741
r_dihedral_angle_3_deg19.512
r_dihedral_angle_4_deg17.795
r_dihedral_angle_1_deg6.732
r_scangle_it3.639
r_scbond_it2.295
r_angle_refined_deg1.583
r_mcangle_it1.527
r_angle_other_deg0.96
r_mcbond_it0.819
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.741
r_dihedral_angle_3_deg19.512
r_dihedral_angle_4_deg17.795
r_dihedral_angle_1_deg6.732
r_scangle_it3.639
r_scbond_it2.295
r_angle_refined_deg1.583
r_mcangle_it1.527
r_angle_other_deg0.96
r_mcbond_it0.819
r_mcbond_other0.181
r_chiral_restr0.092
r_bond_refined_d0.018
r_bond_other_d0.007
r_gen_planes_refined0.006
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4215
Nucleic Acid Atoms
Solvent Atoms193
Heterogen Atoms13

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SBC-Collectdata collection
HKL-3000data reduction
SHELXDphasing
MLPHAREphasing
DMphasing
SOLVEphasing
RESOLVEphasing
HKL-3000phasing