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Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-PucSBC1_pep1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 22% PME 550, 0.1 M HEPES, Cryoprotection: 30% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.05 39.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.744 α = 90 b = 56.492 β = 96.11 c = 42.133 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9794 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 50 100 0.038 21.7 3.7 39304 39299 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.25 1.29 99.9 0.276 3.9 3.3 3926
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.25 41.27 37321 37321 1976 99.82 0.18 0.18 0.17677 0.1769 0.19855 0.1985 RANDOM 14.867
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.115 r_dihedral_angle_4_deg 12.886 r_dihedral_angle_3_deg 11.683 r_dihedral_angle_1_deg 6.797 r_scangle_it 3.16 r_sphericity_free 2.906 r_sphericity_bonded 2.697 r_scbond_it 2.693 r_rigid_bond_restr 2.494 r_mcangle_it 1.575
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.115 r_dihedral_angle_4_deg 12.886 r_dihedral_angle_3_deg 11.683 r_dihedral_angle_1_deg 6.797 r_scangle_it 3.16 r_sphericity_free 2.906 r_sphericity_bonded 2.697 r_scbond_it 2.693 r_rigid_bond_restr 2.494 r_mcangle_it 1.575 r_angle_refined_deg 1.2 r_mcbond_it 1.002 r_nbtor_refined 0.306 r_nbd_refined 0.193 r_symmetry_vdw_refined 0.171 r_symmetry_hbond_refined 0.167 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1286 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement