3ITW

Crystal structure of TioX from Micromonospora sp. ML1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8295Reservoir solution: 400 mM sodium potassium tartrate, 25 mM ammonium sulfate, 2% glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
3.4664.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.321α = 90
b = 109.321β = 90
c = 143.333γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray2007-08-16MSINGLE WAVELENGTH
21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-DAPS21-ID-D
2SYNCHROTRONAPS BEAMLINE 23-ID-BAPS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.154047329

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSe MAD/MIRTHROUGHOUT2.154022426120598.730.234030.23230.26786RANDOM73.024
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.1-0.10.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.864
r_dihedral_angle_3_deg18.964
r_dihedral_angle_4_deg18.931
r_dihedral_angle_1_deg5.235
r_scangle_it2.243
r_scbond_it1.406
r_angle_refined_deg1.17
r_mcangle_it0.942
r_mcbond_it0.597
r_nbtor_refined0.298
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.864
r_dihedral_angle_3_deg18.964
r_dihedral_angle_4_deg18.931
r_dihedral_angle_1_deg5.235
r_scangle_it2.243
r_scbond_it1.406
r_angle_refined_deg1.17
r_mcangle_it0.942
r_mcbond_it0.597
r_nbtor_refined0.298
r_symmetry_vdw_refined0.256
r_symmetry_hbond_refined0.218
r_nbd_refined0.18
r_xyhbond_nbd_refined0.135
r_chiral_restr0.08
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1957
Nucleic Acid Atoms
Solvent Atoms101
Heterogen Atoms

Software

Software
Software NamePurpose
SOLVEphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling