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Crystal structure of Endoglucanase (TM1050) from THERMOTOGA MARITIMA at 1.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 20.00% polyethylene glycol 3000, 0.1M citric acid pH 5.5, Additive: 0.001 M 1,10-phenanthroline, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.18 43.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.383 α = 90 b = 45.225 β = 106.61 c = 66.787 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 28.421 98.6 0.038 12.12 64412 -3 15.065
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 98.6 0.467 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 28.421 64410 3265 99.68 0.151 0.149 0.1582 0.181 0.1873 RANDOM 19.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.04 0.13 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.754 r_dihedral_angle_4_deg 15.107 r_dihedral_angle_3_deg 11.518 r_sphericity_free 8.536 r_dihedral_angle_1_deg 5.625 r_scangle_it 5.302 r_sphericity_bonded 4.788 r_scbond_it 3.527 r_mcangle_it 2.637 r_rigid_bond_restr 1.729
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.754 r_dihedral_angle_4_deg 15.107 r_dihedral_angle_3_deg 11.518 r_sphericity_free 8.536 r_dihedral_angle_1_deg 5.625 r_scangle_it 5.302 r_sphericity_bonded 4.788 r_scbond_it 3.527 r_mcangle_it 2.637 r_rigid_bond_restr 1.729 r_angle_refined_deg 1.719 r_mcbond_it 1.71 r_angle_other_deg 0.994 r_mcbond_other 0.861 r_chiral_restr 0.111 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2639 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing