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Structure of non-mineralized Bfrb (as-isolated) from Pseudomonas aeruginosa to 2.07A Resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IS7 PDB entry 3IS7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 277 35% MPD, 100mM TRIS, 200mM ammonium sulfate, pH 8.5, vapor diffusion, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.93 58.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.761 α = 90 b = 126.274 β = 90 c = 168.553 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2009-06-15 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 1.6531 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 44.02 99.5 0.09 0.09 20.279 6.9 79588 -3 31.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.07 2.14 97.8 0.504 0.504 2.375 5.3 7764
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3IS7 2.07 44.02 79324 3973 99.45 0.2 0.198 0.2101 0.245 0.2496 RANDOM 38.903
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.07 -0.54 -1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.856 r_dihedral_angle_4_deg 29.273 r_dihedral_angle_3_deg 18.042 r_dihedral_angle_1_deg 5.265 r_scangle_it 4.624 r_scbond_it 2.952 r_angle_refined_deg 1.871 r_mcangle_it 1.645 r_mcbond_it 0.913 r_angle_other_deg 0.889
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.856 r_dihedral_angle_4_deg 29.273 r_dihedral_angle_3_deg 18.042 r_dihedral_angle_1_deg 5.265 r_scangle_it 4.624 r_scbond_it 2.952 r_angle_refined_deg 1.871 r_mcangle_it 1.645 r_mcbond_it 0.913 r_angle_other_deg 0.889 r_mcbond_other 0.277 r_chiral_restr 0.137 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7703 Nucleic Acid Atoms Solvent Atoms 363 Heterogen Atoms 174
Software Software Software Name Purpose d*TREK data scaling DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling