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Structure of mineralized Bfrb soaked with FeSO4 from Pseudomonas aeruginosa to 2.25A Resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IS7 PDB entry 3IS7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 277 35% MPD, 100mM MES, 200mM Li2SO4, pH 6.0, vapor diffusion, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.98 58.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.723 α = 90 b = 203.278 β = 90 c = 207.724 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2009-03-13 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 1.0000 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 99.7 0.135 0.135 13.118 7.4 251658 -3 28.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.33 98.5 0.692 0.692 1.853 5.6 24621
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3IS7 2.25 50 250556 12585 99.74 0.179 0.177 0.1852 0.226 0.2305 RANDOM 24.991
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -0.57 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.559 r_dihedral_angle_4_deg 27.908 r_dihedral_angle_3_deg 18.963 r_dihedral_angle_1_deg 5.043 r_scangle_it 4.673 r_scbond_it 2.838 r_angle_refined_deg 1.683 r_mcangle_it 1.626 r_angle_other_deg 1.16 r_mcbond_it 0.815
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.559 r_dihedral_angle_4_deg 27.908 r_dihedral_angle_3_deg 18.963 r_dihedral_angle_1_deg 5.043 r_scangle_it 4.673 r_scbond_it 2.838 r_angle_refined_deg 1.683 r_mcangle_it 1.626 r_angle_other_deg 1.16 r_mcbond_it 0.815 r_mcbond_other 0.217 r_chiral_restr 0.114 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 30805 Nucleic Acid Atoms Solvent Atoms 1500 Heterogen Atoms 658
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction d*TREK data scaling HKL-2000 data reduction HKL-2000 data scaling