☰ Navigation Tabs
Crystal structure of CphA N220G mutant with inhibitor 10a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X8G PDB ENTRY 1X8G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 2.4M (NH4)2SO4, 100mM MES, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.49 50.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.65 α = 90 b = 100.66 β = 90 c = 116.99 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirros 2008-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.436 19.63 99.6 0.041 40.7 11.6 46233 46231 9.691
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.436 1.51 97.8 0.112 16.3 6.6 6547
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1X8G 1.44 19.59 46231 46231 2342 99.72 0.12377 0.12377 0.12284 0.1463 0.14145 0.1636 RANDOM 11.255
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 0.5 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.493 r_dihedral_angle_4_deg 19.15 r_dihedral_angle_3_deg 13.273 r_dihedral_angle_1_deg 6.234 r_scangle_it 2.284 r_scbond_it 1.591 r_angle_refined_deg 1.579 r_angle_other_deg 1.504 r_mcangle_it 0.968 r_mcbond_it 0.583
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.493 r_dihedral_angle_4_deg 19.15 r_dihedral_angle_3_deg 13.273 r_dihedral_angle_1_deg 6.234 r_scangle_it 2.284 r_scbond_it 1.591 r_angle_refined_deg 1.579 r_angle_other_deg 1.504 r_mcangle_it 0.968 r_mcbond_it 0.583 r_mcbond_other 0.194 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1776 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 87
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling