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Crystal structure of an unbound KZ52 neutralizing anti-Ebolavirus antibody.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1N0X PDB entry 1N0X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 1.5 M ammonium sulfate, 0.1 M Tris-HCl pH 8.5 and 12% (v/v) glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 4.68 73.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.52 α = 90 b = 129.52 β = 90 c = 184.96 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11588 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 47.96 99 0.118 7.5 6.99 114050
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 98.8 0.627 2 6.41 6117
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1N0X 2.5 47.955 0.02 114050 5622 94.96 0.205 0.203 0.1966 0.252 0.2455 random 66.853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.274 2.274 -4.547
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.22 f_angle_d 1.202 f_chiral_restr 0.077 f_bond_d 0.008 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6706 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 64
Software Software Software Name Purpose PHENIX refinement CNS refinement d*TREK data scaling PDB_EXTRACT data extraction Blu-Ice data collection d*TREK data reduction CNS phasing