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Crystal structure of mouse Bcl-xl mutant (F105A) at pH 6.0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PQ0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 295 1.7M Ammonium sulphate, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.5 50.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.151 α = 90 b = 63.151 β = 90 c = 110.323 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 mirrors 2008-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6C1 1.0000 PAL/PLS 6C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 91.5 0.09 0.21 16.3 9.4 4463 4232 48.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 50.7 0.098 0.21 3.3 4.3 239
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1PQ0 3 41.56 4463 4232 205 91.54 0.19455 0.19455 0.19223 0.2207 0.23947 0.2557 RANDOM 48.806
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.19 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.131 r_dihedral_angle_3_deg 24.999 r_dihedral_angle_4_deg 21.698 r_dihedral_angle_1_deg 11.162 r_scangle_it 7.24 r_scbond_it 4.521 r_angle_refined_deg 3.728 r_mcangle_it 3.196 r_mcbond_it 1.875 r_chiral_restr 0.392
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.131 r_dihedral_angle_3_deg 24.999 r_dihedral_angle_4_deg 21.698 r_dihedral_angle_1_deg 11.162 r_scangle_it 7.24 r_scbond_it 4.521 r_angle_refined_deg 3.728 r_mcangle_it 3.196 r_mcbond_it 1.875 r_chiral_restr 0.392 r_nbtor_refined 0.36 r_nbd_refined 0.331 r_symmetry_vdw_refined 0.227 r_xyhbond_nbd_refined 0.202 r_bond_refined_d 0.049 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1148 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling