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Structure of the cytosolic domain of E. coli FeoB, GDP-bound form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3I8S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.9 285 10 % PEG 4000, 100 mM Na-malonate, pH 4.9, VAPOR DIFFUSION, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.11 41.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.731 α = 90 b = 56.058 β = 91.7 c = 90.799 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 0.9085 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 25.15 35991
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3I8S 2.25 25.14 34179 34179 1798 99.99 0.18946 0.18622 0.1893 0.24965 0.2505 RANDOM 21.955
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.02 -0.04 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.197 r_dihedral_angle_4_deg 18.024 r_dihedral_angle_3_deg 16.83 r_dihedral_angle_1_deg 6.431 r_scangle_it 3.016 r_scbond_it 2.052 r_angle_refined_deg 1.516 r_mcangle_it 1.293 r_mcbond_it 1.116 r_angle_other_deg 0.963
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.197 r_dihedral_angle_4_deg 18.024 r_dihedral_angle_3_deg 16.83 r_dihedral_angle_1_deg 6.431 r_scangle_it 3.016 r_scbond_it 2.052 r_angle_refined_deg 1.516 r_mcangle_it 1.293 r_mcbond_it 1.116 r_angle_other_deg 0.963 r_symmetry_vdw_other 0.288 r_nbd_refined 0.207 r_symmetry_hbond_refined 0.201 r_nbd_other 0.192 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.18 r_nbtor_refined 0.166 r_mcbond_other 0.148 r_nbtor_other 0.088 r_chiral_restr 0.076 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6045 Nucleic Acid Atoms Solvent Atoms 315 Heterogen Atoms 84
Software Software Software Name Purpose ProDC data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling