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Crystal Structure of a Novel Engineered Diels-Alderase: DA_20_00_A74I
Crystallization Crystal Properties Matthews coefficient Solvent content 2.09 41.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.239 α = 90 b = 83.112 β = 90 c = 85.18 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS IV 2009-01-29
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 15218
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 37.12 14438 762 98.01 0.18775 0.1845 0.1962 0.25307 0.2678 RANDOM 27.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 -0.51 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.73 r_dihedral_angle_4_deg 15.259 r_dihedral_angle_3_deg 12.94 r_dihedral_angle_1_deg 5.315 r_angle_refined_deg 0.889 r_scangle_it 0.398 r_nbtor_refined 0.302 r_scbond_it 0.235 r_mcangle_it 0.172 r_nbd_refined 0.149
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.73 r_dihedral_angle_4_deg 15.259 r_dihedral_angle_3_deg 12.94 r_dihedral_angle_1_deg 5.315 r_angle_refined_deg 0.889 r_scangle_it 0.398 r_nbtor_refined 0.302 r_scbond_it 0.235 r_mcangle_it 0.172 r_nbd_refined 0.149 r_symmetry_vdw_refined 0.126 r_mcbond_it 0.1 r_symmetry_hbond_refined 0.085 r_chiral_restr 0.059 r_xyhbond_nbd_refined 0.057 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2433 Nucleic Acid Atoms Solvent Atoms 348 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement