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Crystal structure of a putative signal transduction protein (eubrec_0645) from eubacterium rectale atcc 33656 at 1.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 40.0000% MPD, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.84 33.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.797 α = 90 b = 60.962 β = 90 c = 76.701 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 32.461 99.3 0.076 9.1 51559 -3 8.178
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.24 95 0.374 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.2 32.461 51494 2621 99.35 0.118 0.117 0.15 0.139 0.1599 RANDOM 12.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.01 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.497 r_dihedral_angle_4_deg 19.899 r_dihedral_angle_3_deg 11.499 r_dihedral_angle_1_deg 6.344 r_scangle_it 4.371 r_scbond_it 3.239 r_mcangle_it 2.347 r_mcbond_it 1.596 r_angle_refined_deg 1.533 r_rigid_bond_restr 1.371
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.497 r_dihedral_angle_4_deg 19.899 r_dihedral_angle_3_deg 11.499 r_dihedral_angle_1_deg 6.344 r_scangle_it 4.371 r_scbond_it 3.239 r_mcangle_it 2.347 r_mcbond_it 1.596 r_angle_refined_deg 1.533 r_rigid_bond_restr 1.371 r_angle_other_deg 0.949 r_mcbond_other 0.525 r_chiral_restr 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1499 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing