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Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATHx-MacroH2ASBCpep2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CR2 PDB entry 2CR2
Crystallization Crystal Properties Matthews coefficient Solvent content 2.14 42.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.953 α = 90 b = 43.086 β = 118.15 c = 87.453 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.43 50 0.057 31.7 4.3 54191
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.43 1.48 0.11 14.8 4.2 5266
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2CR2 1.43 31.23 51030 2740 99.37 0.17528 0.17364 0.1833 0.20576 0.2082 RANDOM 10.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.413 r_dihedral_angle_4_deg 15.979 r_dihedral_angle_3_deg 10.981 r_dihedral_angle_1_deg 6.037 r_sphericity_free 3.367 r_scangle_it 3.124 r_sphericity_bonded 2.303 r_scbond_it 2.194 r_mcangle_it 1.617 r_angle_refined_deg 1.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.413 r_dihedral_angle_4_deg 15.979 r_dihedral_angle_3_deg 10.981 r_dihedral_angle_1_deg 6.037 r_sphericity_free 3.367 r_scangle_it 3.124 r_sphericity_bonded 2.303 r_scbond_it 2.194 r_mcangle_it 1.617 r_angle_refined_deg 1.226 r_rigid_bond_restr 1.171 r_mcbond_it 1.098 r_nbtor_refined 0.311 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.172 r_symmetry_vdw_refined 0.159 r_symmetry_hbond_refined 0.149 r_chiral_restr 0.082 r_metal_ion_refined 0.05 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2326 Nucleic Acid Atoms Solvent Atoms 404 Heterogen Atoms 10
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling