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Crystal structure of hemoglobin from mouse (Mus musculus)at 2.8
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HAB PDB ENTRY 1hab
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.081 α = 90 b = 65.94 β = 90 c = 150.931 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 6000 2009-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 19.94 93 0.1135 2.8 2.61 12720
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.9 90 0.4242 1 1.98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1hab 2.8 19.94 11999 616 92.88 0.24547 0.24259 0.2401 0.30561 0.2995 RANDOM 36.566
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.974 r_dihedral_angle_3_deg 23.837 r_dihedral_angle_4_deg 17.399 r_dihedral_angle_1_deg 6.555 r_angle_refined_deg 1.572 r_scangle_it 1.517 r_scbond_it 1.013 r_mcangle_it 0.886 r_mcbond_it 0.529 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.974 r_dihedral_angle_3_deg 23.837 r_dihedral_angle_4_deg 17.399 r_dihedral_angle_1_deg 6.555 r_angle_refined_deg 1.572 r_scangle_it 1.517 r_scbond_it 1.013 r_mcangle_it 0.886 r_mcbond_it 0.529 r_nbtor_refined 0.318 r_nbd_refined 0.285 r_symmetry_vdw_refined 0.26 r_xyhbond_nbd_refined 0.217 r_metal_ion_refined 0.16 r_symmetry_hbond_refined 0.107 r_chiral_restr 0.095 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4330 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 172
Software Software Software Name Purpose MAR345dtb data collection PHASES phasing REFMAC refinement AUTOMAR data reduction SCALEPACK data scaling