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Discovery of novel inhibitors of PDE10A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O8H
Crystallization Crystal Properties Matthews coefficient Solvent content 2.67 53.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.66 α = 90 b = 120.66 β = 90 c = 83.21 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC M SINGLE WAVELENGTH 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE Rigaku FRE 1.54 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 44.25 85.4 67918 57998 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.53 1.59 17.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2O8H 1.53 44.25 57989 4479 85.38 0.186 0.184 0.1826 0.211 0.2097 RANDOM 23.128
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.32 -0.64 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.884 r_dihedral_angle_4_deg 21.318 r_dihedral_angle_3_deg 12.191 r_dihedral_angle_1_deg 4.67 r_scangle_it 2.9 r_scbond_it 1.862 r_angle_refined_deg 1.179 r_mcangle_it 1.104 r_mcbond_it 0.736 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.884 r_dihedral_angle_4_deg 21.318 r_dihedral_angle_3_deg 12.191 r_dihedral_angle_1_deg 4.67 r_scangle_it 2.9 r_scbond_it 1.862 r_angle_refined_deg 1.179 r_mcangle_it 1.104 r_mcbond_it 0.736 r_nbtor_refined 0.302 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.203 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.078 r_metal_ion_refined 0.044 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2488 Nucleic Acid Atoms Solvent Atoms 456 Heterogen Atoms 42
Software Software Software Name Purpose d*TREK data scaling REFMAC refinement PDB_EXTRACT data extraction