3HOS | pdb_00003hos

Crystal structure of the mariner Mos1 paired end complex with Mg

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2F7T	PDB entry 2F7T

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP			VAPOR DIFFUSION, HANGING DROP

Crystal Properties
Matthews coefficient	Solvent content
5.1168	75.9616

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 121.232	α = 90
b = 85.033	β = 98.93
c = 131.273	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray		IMAGE PLATE	MAR scanner 345 mm plate		2006-09-02	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE BM14	0.9535	ESRF	BM14

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.5	30	98.8	0.17	9.5	3.9	33149	33149	1	1

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.5	3.7	99		0.665	2.5	3.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB entry 2F7T	3.5	29.87	32494	32494	1647	96.71	0.222	0.222	0.219	0.22	0.279	0.26	RANDOM	70.567

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.64		-4.04	3.54		-5.43

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	40.204
r_mcangle_it	33.639
r_mcbond_it	28.789
r_dihedral_angle_3_deg	19.474
r_dihedral_angle_4_deg	16.983
r_scangle_it	13.81
r_scbond_it	9.835
r_mcbond_other	8.489
r_dihedral_angle_1_deg	4.109
r_angle_refined_deg	1.997
r_angle_other_deg	0.94
r_nbd_other	0.307
r_nbd_refined	0.294
r_symmetry_vdw_other	0.257
r_nbtor_refined	0.24
r_xyhbond_nbd_refined	0.24
r_symmetry_vdw_refined	0.233
r_symmetry_metal_ion_refined	0.196
r_symmetry_hbond_refined	0.189
r_xyhbond_nbd_other	0.13
r_nbtor_other	0.101
r_chiral_restr	0.091
r_bond_refined_d	0.015
r_gen_planes_refined	0.006
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5614
Nucleic Acid Atoms	3258
Solvent Atoms	2
Heterogen Atoms	11

Software

Software
Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing
DM	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
ADSC	data collection