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Simvastatin Synthase (LovD), from Aspergillus terreus, S5 mutant complex with monacolin J acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HLC PDB entry 3HLC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 298 16% PEG 3350, 0.1M Bis-Tris pH 6.5, 0.1 M magnesium formate, 10 mM dithiothreitol, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.05 59.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.543 α = 90 b = 75.192 β = 90 c = 133.506 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-10-29 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 60 99.8 0.123 12.977 6.2 40428
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.397 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 3HLC 2 44.01 40354 38324 2029 99.66 0.18044 0.17869 0.1969 0.21339 0.2295 RANDOM 34.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.04 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.326 r_dihedral_angle_4_deg 14.228 r_dihedral_angle_3_deg 14.039 r_dihedral_angle_1_deg 5.748 r_scangle_it 4.7 r_angle_other_deg 4.076 r_scbond_it 3.019 r_mcangle_it 2.092 r_mcbond_it 1.281 r_angle_refined_deg 1.214
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.326 r_dihedral_angle_4_deg 14.228 r_dihedral_angle_3_deg 14.039 r_dihedral_angle_1_deg 5.748 r_scangle_it 4.7 r_angle_other_deg 4.076 r_scbond_it 3.019 r_mcangle_it 2.092 r_mcbond_it 1.281 r_angle_refined_deg 1.214 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_other 0.006 r_gen_planes_refined 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3311 Nucleic Acid Atoms Solvent Atoms 275 Heterogen Atoms 60
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection