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CRYSTAL STRUCTURE OF A FERRITIN LIKE PROTEIN (CC_0557) FROM CAULOBACTER VIBRIOIDES AT 1.95 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.93 293 17.5000% polyethylene glycol 6000, 0.1M citric acid pH 4.93, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.01 38.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.633 α = 90 b = 44.017 β = 96.17 c = 119.381 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-02-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97876,0.97828 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 29.424 96.9 0.039 12.61 3.88 41306 -3 31.69
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 94.5 0.501 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 29.424 41295 2079 99.2 0.188 0.185 0.1902 0.232 0.2338 RANDOM 39.863
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 1.33 0.48 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.978 r_dihedral_angle_4_deg 14.907 r_dihedral_angle_3_deg 13.841 r_scangle_it 6.567 r_scbond_it 4.941 r_dihedral_angle_1_deg 4.703 r_mcangle_it 2.966 r_mcbond_it 2.005 r_angle_refined_deg 1.475 r_angle_other_deg 1.044
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.978 r_dihedral_angle_4_deg 14.907 r_dihedral_angle_3_deg 13.841 r_scangle_it 6.567 r_scbond_it 4.941 r_dihedral_angle_1_deg 4.703 r_mcangle_it 2.966 r_mcbond_it 2.005 r_angle_refined_deg 1.475 r_angle_other_deg 1.044 r_mcbond_other 0.903 r_symmetry_vdw_other 0.296 r_symmetry_vdw_refined 0.231 r_nbd_refined 0.217 r_nbtor_refined 0.185 r_nbd_other 0.179 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.089 r_nbtor_other 0.085 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4424 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction autoSHARP phasing SHELXD phasing