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Structure of human Leukotriene C4 synthase in complex with glutathione sulfonate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2UUH PDB ENTRY 2uuh
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 2M AmSO4, 0.1M Bis-Tris, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 5.9532 79.339
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.718 α = 90 b = 170.718 β = 90 c = 170.718 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8726 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 98.564 99.9 0.145 0.145 4.856 25.1 9259 61
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3.06 100 0.855 0.855 0.9 25.4 1328
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2uuh 2.9 38.18 9214 440 99.98 0.187 0.187 0.185 0.1896 0.232 0.2313 RANDOM 46.433
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.705 r_dihedral_angle_4_deg 18.919 r_dihedral_angle_3_deg 18.227 r_dihedral_angle_1_deg 5.592 r_scangle_it 2.954 r_scbond_it 1.804 r_angle_refined_deg 1.582 r_mcangle_it 1.398 r_mcbond_it 0.761 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.705 r_dihedral_angle_4_deg 18.919 r_dihedral_angle_3_deg 18.227 r_dihedral_angle_1_deg 5.592 r_scangle_it 2.954 r_scbond_it 1.804 r_angle_refined_deg 1.582 r_mcangle_it 1.398 r_mcbond_it 0.761 r_nbtor_refined 0.313 r_nbd_refined 0.237 r_symmetry_hbond_refined 0.236 r_xyhbond_nbd_refined 0.168 r_symmetry_vdw_refined 0.143 r_chiral_restr 0.095 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1135 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 87
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction PXSOFT data collection XSCALE data scaling