X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1SA0PDB ENTRY 1SA0

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7277PEG, PIPES BUFFER, pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.8468

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 326.71α = 90
b = 326.71β = 90
c = 54.12γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-02-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.978ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.65098.60.07314.24.8838708
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.63.788.50.6392.294.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1SA03.62036545194099.620.209340.207010.25254RANDOM65.605
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.78-0.39-0.781.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.233
r_angle_refined_deg1.626
r_scangle_it1.077
r_scbond_it0.661
r_mcangle_it0.389
r_symmetry_vdw_refined0.334
r_nbd_refined0.272
r_symmetry_hbond_refined0.213
r_mcbond_it0.196
r_xyhbond_nbd_refined0.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.233
r_angle_refined_deg1.626
r_scangle_it1.077
r_scbond_it0.661
r_mcangle_it0.389
r_symmetry_vdw_refined0.334
r_nbd_refined0.272
r_symmetry_hbond_refined0.213
r_mcbond_it0.196
r_xyhbond_nbd_refined0.18
r_metal_ion_refined0.13
r_chiral_restr0.117
r_bond_refined_d0.014
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14027
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms217

Software

Software
Software NamePurpose
AMoREphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling