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Tubulin: RB3 Stathmin-like domain complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SA0 PDB ENTRY 1SA0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 PEG, PIPES BUFFER, pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.86 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 328.826 α = 90 b = 328.826 β = 90 c = 53.711 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.978 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.65 25 96.4 0.055 19 3.1 37976 36513
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.65 3.73 96.9 0.442 2.28 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SA0 3.65 20 34598 1810 96.63 0.21553 0.2135 0.2462 0.25426 0.2819 RANDOM 61.974
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.25 -1.63 -3.25 4.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.645 r_angle_refined_deg 1.532 r_scangle_it 1.452 r_scbond_it 0.84 r_mcangle_it 0.633 r_symmetry_vdw_refined 0.337 r_mcbond_it 0.325 r_metal_ion_refined 0.285 r_nbd_refined 0.262 r_xyhbond_nbd_refined 0.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.645 r_angle_refined_deg 1.532 r_scangle_it 1.452 r_scbond_it 0.84 r_mcangle_it 0.633 r_symmetry_vdw_refined 0.337 r_mcbond_it 0.325 r_metal_ion_refined 0.285 r_nbd_refined 0.262 r_xyhbond_nbd_refined 0.182 r_chiral_restr 0.105 r_bond_refined_d 0.013 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14003 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 122
Software Software Software Name Purpose ADSC data collection AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling