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Crystal structure of a putative nitroreductase (reut_a1228) from ralstonia eutropha jmp134 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.1860M magnesium acetate, 13.6000% polyethylene glycol 3350, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.47 50.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.865 α = 90 b = 78.865 β = 90 c = 136.555 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-02-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97837 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 68.359 99.8 0.105 0.105 5.925 5.2 33910 22.833
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 98.8 0.451 0.451 1.4 3.7 4824
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 68.359 33851 1715 99.72 0.176 0.174 0.1916 0.208 0.2235 RANDOM 22.434
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.67 -0.84 -1.67 2.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.933 r_dihedral_angle_4_deg 13.849 r_dihedral_angle_3_deg 11.602 r_dihedral_angle_1_deg 4.077 r_scangle_it 1.915 r_mcangle_it 1.899 r_angle_refined_deg 1.736 r_angle_other_deg 1.378 r_scbond_it 1.251 r_mcbond_it 1.166
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.933 r_dihedral_angle_4_deg 13.849 r_dihedral_angle_3_deg 11.602 r_dihedral_angle_1_deg 4.077 r_scangle_it 1.915 r_mcangle_it 1.899 r_angle_refined_deg 1.736 r_angle_other_deg 1.378 r_scbond_it 1.251 r_mcbond_it 1.166 r_mcbond_other 0.26 r_chiral_restr 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3231 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction