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HCV NS5b polymerase complex with a substituted benzothiadizine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 micro seeding requied, chnage from pH 5.5 to 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.34 47.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.74 α = 90 b = 107.442 β = 90 c = 126.807 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM1A 1.0000 ESRF BM1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 81.92 87 0.066 0.066 11.3 112795 112795 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 81.92 107086 5679 87.55 0.22989 0.22886 0.2284 0.24962 0.2307 RANDOM 16.834
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 0.34 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.247 r_dihedral_angle_3_deg 12.153 r_dihedral_angle_4_deg 11.772 r_dihedral_angle_1_deg 4.625 r_scangle_it 1.19 r_angle_refined_deg 0.939 r_scbond_it 0.734 r_mcangle_it 0.543 r_mcbond_it 0.312 r_nbtor_refined 0.291
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.247 r_dihedral_angle_3_deg 12.153 r_dihedral_angle_4_deg 11.772 r_dihedral_angle_1_deg 4.625 r_scangle_it 1.19 r_angle_refined_deg 0.939 r_scbond_it 0.734 r_mcangle_it 0.543 r_mcbond_it 0.312 r_nbtor_refined 0.291 r_symmetry_vdw_refined 0.176 r_nbd_refined 0.175 r_xyhbond_nbd_refined 0.095 r_symmetry_hbond_refined 0.095 r_chiral_restr 0.059 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8748 Nucleic Acid Atoms Solvent Atoms 473 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling AMoRE phasing