☰ Navigation Tabs
Crystal structure of mutator mutT from Bartonella henselae
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FK9 PDB entry 3FK9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 Proplex sparse matrix screen condition B5, 0.1 M Hepes pH 7.5, 10% PEG 4000, 0.1M MgCl2, 20% Glycerol as cryo, 26.9 mg/mL Protein, crystal tracking ID 202117b5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.62 53.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.5 α = 90 b = 93.49 β = 109.24 c = 43.88 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0000 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 98.4 0.073 12.71 21194 -3 36.598
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 88.2 0.488 2.06 1406
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3FK9 2.1 50 21194 1086 98.59 0.203 0.202 0.2028 0.234 0.2361 RANDOM 30.479
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.17 -0.94 -1.31 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.673 r_dihedral_angle_4_deg 24.133 r_dihedral_angle_3_deg 14.183 r_dihedral_angle_1_deg 6.301 r_scangle_it 3.666 r_scbond_it 2.257 r_mcangle_it 1.791 r_angle_refined_deg 1.391 r_mcbond_it 0.977 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.673 r_dihedral_angle_4_deg 24.133 r_dihedral_angle_3_deg 14.183 r_dihedral_angle_1_deg 6.301 r_scangle_it 3.666 r_scbond_it 2.257 r_mcangle_it 1.791 r_angle_refined_deg 1.391 r_mcbond_it 0.977 r_chiral_restr 0.102 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2060 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms 2
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection XDS data reduction