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Bacillus anthracis nicotinate mononucleotide adenylytransferase (nadD) in complex with inhibitor CID 3289443
Crystallization Crystal Properties Matthews coefficient Solvent content 2.21 44.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.968 α = 90 b = 97.679 β = 90 c = 44.923 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 65.8 0.037 26467 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.02 50 25069 1338 99.88 0.20818 0.20565 0.2055 0.25545 0.2503 RANDOM 27.991
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 -0.97 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.224 r_dihedral_angle_4_deg 22.62 r_dihedral_angle_3_deg 14.279 r_dihedral_angle_1_deg 5.886 r_scangle_it 2.537 r_scbond_it 1.667 r_angle_refined_deg 1.314 r_mcangle_it 1.244 r_mcbond_it 0.764 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.224 r_dihedral_angle_4_deg 22.62 r_dihedral_angle_3_deg 14.279 r_dihedral_angle_1_deg 5.886 r_scangle_it 2.537 r_scbond_it 1.667 r_angle_refined_deg 1.314 r_mcangle_it 1.244 r_mcbond_it 0.764 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.235 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.151 r_metal_ion_refined 0.115 r_chiral_restr 0.078 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3102 Nucleic Acid Atoms Solvent Atoms 306 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement