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BHA10 IgG1 Fab double mutant variant - antibody directed at human LTBR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HC0 PDB entry 3HC0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 20% PEG 4000, 200 mM calcium acetate 10 mM zinc chloride and 100 mM Tris at pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.14 60.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.463 α = 90 b = 127.608 β = 90 c = 123.253 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 1.000 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 50 99.5 0.076 62526 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.72 1.76 94.3 0.483
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3HC0 1.72 24.36 2 62526 59353 3171 99.51 0.15964 0.15807 0.1794 0.19033 0.21 RANDOM 19.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.37 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.906 r_dihedral_angle_4_deg 21.966 r_dihedral_angle_3_deg 12.407 r_dihedral_angle_1_deg 6.427 r_sphericity_free 5.389 r_scangle_it 2.999 r_scbond_it 2.18 r_sphericity_bonded 1.707 r_mcangle_it 1.545 r_angle_refined_deg 1.348
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.906 r_dihedral_angle_4_deg 21.966 r_dihedral_angle_3_deg 12.407 r_dihedral_angle_1_deg 6.427 r_sphericity_free 5.389 r_scangle_it 2.999 r_scbond_it 2.18 r_sphericity_bonded 1.707 r_mcangle_it 1.545 r_angle_refined_deg 1.348 r_rigid_bond_restr 1.082 r_mcbond_it 1.068 r_angle_other_deg 0.832 r_symmetry_hbond_refined 0.515 r_mcbond_other 0.323 r_nbd_refined 0.215 r_nbd_other 0.196 r_symmetry_vdw_other 0.192 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.172 r_symmetry_vdw_refined 0.158 r_chiral_restr 0.084 r_nbtor_other 0.084 r_metal_ion_refined 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3346 Nucleic Acid Atoms Solvent Atoms 423 Heterogen Atoms 14
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling