X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2GU1PDB ENTRY 2Gu1

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROPVAPOR DIFFUSION, SITTING DROP
Crystal Properties
Matthews coefficientSolvent content
3.0359.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.35α = 90
b = 136.05β = 99.32
c = 191.87γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rmirrors2009-01-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.97930ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.945.55181285

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2Gu11.945.5517219690871000.198150.196460.2306RANDOM13.272
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.110.02-0.130.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.273
r_dihedral_angle_4_deg17.213
r_dihedral_angle_3_deg14.693
r_dihedral_angle_1_deg6.439
r_scangle_it2.774
r_scbond_it1.86
r_angle_refined_deg1.508
r_mcangle_it1.059
r_angle_other_deg0.959
r_mcbond_it0.687
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.273
r_dihedral_angle_4_deg17.213
r_dihedral_angle_3_deg14.693
r_dihedral_angle_1_deg6.439
r_scangle_it2.774
r_scbond_it1.86
r_angle_refined_deg1.508
r_mcangle_it1.059
r_angle_other_deg0.959
r_mcbond_it0.687
r_symmetry_vdw_other0.27
r_nbd_refined0.214
r_nbd_other0.197
r_mcbond_other0.195
r_symmetry_hbond_refined0.177
r_nbtor_refined0.176
r_symmetry_vdw_refined0.164
r_xyhbond_nbd_refined0.158
r_xyhbond_nbd_other0.131
r_chiral_restr0.086
r_nbtor_other0.085
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13392
Nucleic Acid Atoms
Solvent Atoms759
Heterogen Atoms235

Software

Software
Software NamePurpose
ADSCdata collection
MOLREPphasing
REFMACrefinement
XDSdata reduction
SCALAdata scaling