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Crystal structure of Myosin VI in complex with Dab2 peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 289 20% PEG3350, 0.2M potassium thiocyanate for Myosin VI and 20% PEG3350, 0.2M sodium iodide for Dab2, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K 2 VAPOR DIFFUSION, HANGING DROP 7 289 20% PEG3350, 0.2M sodium iodide, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.177 α = 90 b = 69.952 β = 98.02 c = 78.537 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2008-10-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 77.85 97 0.084 0.084 8.893 3.7 36631
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.32 95.3 0.548 0.548 1.4 3.6 5217
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.2 30 36631 1833 96.72 0.192 0.189 0.1868 0.251 0.2459 RANDOM 31.984
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.11 0.73 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.54 r_dihedral_angle_4_deg 15.488 r_dihedral_angle_3_deg 14.97 r_scangle_it 5.833 r_dihedral_angle_1_deg 5.401 r_scbond_it 3.983 r_mcangle_it 2.863 r_mcbond_it 1.632 r_angle_refined_deg 1.092 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.54 r_dihedral_angle_4_deg 15.488 r_dihedral_angle_3_deg 14.97 r_scangle_it 5.833 r_dihedral_angle_1_deg 5.401 r_scbond_it 3.983 r_mcangle_it 2.863 r_mcbond_it 1.632 r_angle_refined_deg 1.092 r_nbtor_refined 0.297 r_nbd_refined 0.193 r_symmetry_hbond_refined 0.169 r_symmetry_vdw_refined 0.148 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5087 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 18
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection