X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION629813% PEG 4K, 0.2M Ammonium sulfate, 20% Ethylene Glycol, 0.1% n-octyl-[beta]-D-glucopyranoside, pH 6.0, EVAPORATION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.8367.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 219.4α = 90
b = 113.743β = 90
c = 48.37γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200CCDMARMOSAIC 300 mm CCD2009-03-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D0.9792APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3501000.0760.07632.776.254963549632.22.247.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3497.30.5860.5862.24.32524

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.3502.22.25496351794276399.290.222970.221680.247RANDOM50.18
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.92-0.940.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.801
r_dihedral_angle_4_deg18.695
r_dihedral_angle_3_deg17.494
r_dihedral_angle_1_deg5.353
r_scangle_it1.522
r_angle_refined_deg1.106
r_scbond_it0.926
r_mcangle_it0.786
r_mcbond_it0.416
r_nbtor_refined0.294
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.801
r_dihedral_angle_4_deg18.695
r_dihedral_angle_3_deg17.494
r_dihedral_angle_1_deg5.353
r_scangle_it1.522
r_angle_refined_deg1.106
r_scbond_it0.926
r_mcangle_it0.786
r_mcbond_it0.416
r_nbtor_refined0.294
r_nbd_refined0.191
r_symmetry_vdw_refined0.156
r_xyhbond_nbd_refined0.12
r_symmetry_hbond_refined0.092
r_chiral_restr0.08
r_bond_refined_d0.007
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5073
Nucleic Acid Atoms
Solvent Atoms324
Heterogen Atoms8

Software

Software
Software NamePurpose
HKL-2000data collection
SOLVEphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling