3H5Y

Norovirus polymerase+primer/template+CTP complex at 6 mM MnCl2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7298160 g/L PEG 8000, 250 g/L glycerol, 100 mM Tris-Cl, 50 mM KCl, 4 mM MgCl2, 6 mM MnCl2, 14 mM mercaptoethanol, 1 g/L CHAPS, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.6954.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.2α = 90
b = 93.6β = 90
c = 96.3γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDWHITE BEAM SLITS, DOUBLE CRYSTAL MONOCHROMATOR (DCM), VERTICALLY FOCUSING MIRROR (VFM)2008-02-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-10.97934CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.772099.90.0440.04423.16.1659046590436.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.771.971000.6220.6223.26.117876

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT3BSO1.7719.74626076260732961000.206150.206150.204430.2387RANDOM34.253
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.13-1.97-0.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.554
r_dihedral_angle_4_deg17.726
r_dihedral_angle_3_deg12.942
r_dihedral_angle_1_deg4.992
r_scangle_it4.375
r_scbond_it2.972
r_mcangle_it2.223
r_mcbond_it1.316
r_angle_refined_deg1.091
r_chiral_restr0.069
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.554
r_dihedral_angle_4_deg17.726
r_dihedral_angle_3_deg12.942
r_dihedral_angle_1_deg4.992
r_scangle_it4.375
r_scbond_it2.972
r_mcangle_it2.223
r_mcbond_it1.316
r_angle_refined_deg1.091
r_chiral_restr0.069
r_bond_refined_d0.008
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3725
Nucleic Acid Atoms344
Solvent Atoms372
Heterogen Atoms57

Software

Software
Software NamePurpose
XDSdata scaling
PHASERphasing
REFMACrefinement
XDSdata reduction