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Norovirus polymerase+primer/template+CTP complex at 6 mM MnCl2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BSO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 160 g/L PEG 8000, 250 g/L glycerol, 100 mM Tris-Cl, 50 mM KCl, 4 mM MgCl2, 6 mM MnCl2, 14 mM mercaptoethanol, 1 g/L CHAPS, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.69 54.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.2 α = 90 b = 93.6 β = 90 c = 96.3 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD WHITE BEAM SLITS, DOUBLE CRYSTAL MONOCHROMATOR (DCM), VERTICALLY FOCUSING MIRROR (VFM) 2008-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97934 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 20 99.9 0.044 0.044 23.1 6.1 65904 65904 36.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.97 100 0.622 0.622 3.2 6.1 17876
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3BSO 1.77 19.74 62607 62607 3296 100 0.20615 0.20615 0.20443 0.1976 0.2387 0.2266 RANDOM 34.253
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.13 -1.97 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.554 r_dihedral_angle_4_deg 17.726 r_dihedral_angle_3_deg 12.942 r_dihedral_angle_1_deg 4.992 r_scangle_it 4.375 r_scbond_it 2.972 r_mcangle_it 2.223 r_mcbond_it 1.316 r_angle_refined_deg 1.091 r_chiral_restr 0.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.554 r_dihedral_angle_4_deg 17.726 r_dihedral_angle_3_deg 12.942 r_dihedral_angle_1_deg 4.992 r_scangle_it 4.375 r_scbond_it 2.972 r_mcangle_it 2.223 r_mcbond_it 1.316 r_angle_refined_deg 1.091 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3725 Nucleic Acid Atoms 344 Solvent Atoms 372 Heterogen Atoms 57
Software Software Software Name Purpose XDS data scaling PHASER phasing REFMAC refinement XDS data reduction