☰ Navigation Tabs
CRYSTAL STRUCTURE OF A TETRACENOMYCIN POLYKETIDE SYNTHESIS PROTEIN (TCMJ) FROM XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS AT 1.60 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 35.0% 2-propanol, 0.2M Zn(OAc)2, 0.1M Imidazole pH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.19 43.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.92 α = 90 b = 72.03 β = 110.76 c = 32.75 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror (vertical focusing) 2006-08-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.918370,0.979616,0.979305 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 28.502 96.8 0.105 9.99 7.2 13913 -3 11.422
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.65 80.3 0.61 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 28.502 13912 696 98.9 0.184 0.182 0.1868 0.22 0.2254 RANDOM 13.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.16 0.27 1.29 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.853 r_dihedral_angle_4_deg 11.829 r_dihedral_angle_3_deg 10.09 r_dihedral_angle_1_deg 6.621 r_angle_refined_deg 1.418 r_scangle_it 1.377 r_mcangle_it 1.281 r_scbond_it 0.957 r_mcbond_it 0.941 r_angle_other_deg 0.874
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.853 r_dihedral_angle_4_deg 11.829 r_dihedral_angle_3_deg 10.09 r_dihedral_angle_1_deg 6.621 r_angle_refined_deg 1.418 r_scangle_it 1.377 r_mcangle_it 1.281 r_scbond_it 0.957 r_mcbond_it 0.941 r_angle_other_deg 0.874 r_mcbond_other 0.225 r_symmetry_vdw_other 0.217 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.204 r_nbd_other 0.193 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.157 r_symmetry_hbond_refined 0.137 r_chiral_restr 0.085 r_nbtor_other 0.083 r_metal_ion_refined 0.064 r_symmetry_metal_ion_refined 0.048 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 855 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing