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The crystal structure of the protein with unknown function from Staphylococcus aureus subsp. aureus Mu50
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.1 289 0.2M calcium chloride dihydrate, 20% PEG3350, pH 5.1, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.06 40.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.033 α = 90 b = 47.033 β = 90 c = 404.486 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r MIRRORS 2008-11-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794, 0.9796 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 67.42 94 0.069 35.9 9.8 20087 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 64.8 0.503 3.1 8.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 67.42 21362 20087 1086 94 0.198 0.196 0.207 0.238 0.2513 RANDOM 16.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.05 -0.1 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.839 r_dihedral_angle_3_deg 13.605 r_dihedral_angle_4_deg 13.43 r_dihedral_angle_1_deg 5.799 r_scangle_it 3.896 r_scbond_it 2.656 r_angle_refined_deg 1.618 r_mcangle_it 1.594 r_angle_other_deg 0.975 r_mcbond_it 0.912
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.839 r_dihedral_angle_3_deg 13.605 r_dihedral_angle_4_deg 13.43 r_dihedral_angle_1_deg 5.799 r_scangle_it 3.896 r_scbond_it 2.656 r_angle_refined_deg 1.618 r_mcangle_it 1.594 r_angle_other_deg 0.975 r_mcbond_it 0.912 r_mcbond_other 0.294 r_chiral_restr 0.099 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2191 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling