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Crystal structure of acid-beta-glucosidase at pH 5.5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION vapor diffusion
Crystal Properties Matthews coefficient Solvent content 3.22 61.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.05 α = 90 b = 91.713 β = 111.13 c = 152.283 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 141.4 227766
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.84 19.8 227766 11460 93.63 0.193 0.191 0.231 0.1933 RANDOM 27.975
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.708 r_dihedral_angle_4_deg 21.02 r_dihedral_angle_3_deg 15.626 r_dihedral_angle_1_deg 7.13 r_scangle_it 4.019 r_scbond_it 2.654 r_mcangle_it 1.77 r_angle_refined_deg 1.683 r_mcbond_it 1.097 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.708 r_dihedral_angle_4_deg 21.02 r_dihedral_angle_3_deg 15.626 r_dihedral_angle_1_deg 7.13 r_scangle_it 4.019 r_scbond_it 2.654 r_mcangle_it 1.77 r_angle_refined_deg 1.683 r_mcbond_it 1.097 r_nbtor_refined 0.311 r_xyhbond_nbd_refined 0.265 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.212 r_chiral_restr 0.123 r_symmetry_hbond_refined 0.094 r_bond_refined_d 0.017 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15720 Nucleic Acid Atoms Solvent Atoms 1679 Heterogen Atoms 371
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction