☰ Navigation Tabs
Crystal structure of Putative calcium/calmodulin-dependent protein kinase type II association domain (YP_315894.1) from THIOBACILLUS DENITRIFICANS ATCC 25259 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 277 0.2000M NH4F, 20.0000% PEG-3350, No Buffer pH 6.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.63 53.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.445 α = 90 b = 89.655 β = 90 c = 90.259 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-01-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97966,0.97951 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.892 94.4 0.073 9.23 22722 -3 25.968
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 85.4 0.586 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.01 28.892 22693 1177 97.5 0.175 0.173 0.1807 0.211 0.2161 RANDOM 38.927
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 -1.23 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.147 r_dihedral_angle_4_deg 15.712 r_dihedral_angle_3_deg 12.083 r_scangle_it 5.263 r_scbond_it 3.802 r_dihedral_angle_1_deg 3.788 r_mcangle_it 2.337 r_angle_refined_deg 1.588 r_mcbond_it 1.496 r_angle_other_deg 0.923
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.147 r_dihedral_angle_4_deg 15.712 r_dihedral_angle_3_deg 12.083 r_scangle_it 5.263 r_scbond_it 3.802 r_dihedral_angle_1_deg 3.788 r_mcangle_it 2.337 r_angle_refined_deg 1.588 r_mcbond_it 1.496 r_angle_other_deg 0.923 r_mcbond_other 0.277 r_symmetry_vdw_other 0.249 r_nbd_refined 0.209 r_nbd_other 0.208 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.128 r_symmetry_vdw_refined 0.128 r_chiral_restr 0.102 r_nbtor_other 0.085 r_symmetry_hbond_refined 0.074 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1958 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing