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Human DNA polymerase iota in complex with T template DNA and incoming dGTP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 6.5 15% PEG 5000MME, 0.2M NH4SO4, 0.1M MES 6.5, 5% glycerol, hanging drop
Crystal Properties Matthews coefficient Solvent content 2.72 54.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.07 α = 90 b = 98.07 β = 90 c = 203.38 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2008-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.7 0.121 57.94 13.3 40059
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.577 8.9 3899
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 23.84 39636 826 100 0.219 0.218 0.2153 0.248 0.2397 RANDOM 43.899
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 -0.21 -0.43 0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.19 r_dihedral_angle_4_deg 22.614 r_dihedral_angle_3_deg 17.037 r_dihedral_angle_1_deg 6.4 r_scangle_it 3.836 r_scbond_it 2.558 r_angle_refined_deg 1.821 r_mcangle_it 1.614 r_mcbond_it 0.899 r_chiral_restr 0.135
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.19 r_dihedral_angle_4_deg 22.614 r_dihedral_angle_3_deg 17.037 r_dihedral_angle_1_deg 6.4 r_scangle_it 3.836 r_scbond_it 2.558 r_angle_refined_deg 1.821 r_mcangle_it 1.614 r_mcbond_it 0.899 r_chiral_restr 0.135 r_bond_refined_d 0.019 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2892 Nucleic Acid Atoms 320 Solvent Atoms 240 Heterogen Atoms 33
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction