☰ Navigation Tabs
AmpC beta-lactamase in complex with Fragment-based Inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KE4 PDB entry 1KE4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.7 298 1.7M potassium phosphate, pH 8.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.49 50.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.594 α = 90 b = 75.93 β = 116.37 c = 97.659 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2008-01-25 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 45.3 99.7 52364
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 98.9 0.482 1.6
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB entry 1KE4 2.1 45.27 45418 2263 99.9 0.194 0.191 0.1925 0.244 0.2464 25.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.05 0.04 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.954 r_dihedral_angle_3_deg 14.538 r_dihedral_angle_4_deg 11.715 r_dihedral_angle_1_deg 7.262 r_scangle_it 1.644 r_angle_refined_deg 1.545 r_scbond_it 1.187 r_mcangle_it 0.794 r_mcbond_it 0.606 r_symmetry_vdw_refined 0.333
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.954 r_dihedral_angle_3_deg 14.538 r_dihedral_angle_4_deg 11.715 r_dihedral_angle_1_deg 7.262 r_scangle_it 1.644 r_angle_refined_deg 1.545 r_scbond_it 1.187 r_mcangle_it 0.794 r_mcbond_it 0.606 r_symmetry_vdw_refined 0.333 r_nbtor_refined 0.304 r_chiral_restr 0.291 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.122 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5792 Nucleic Acid Atoms Solvent Atoms 652 Heterogen Atoms 104
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction